Master's Thesis
The Master's Degree has an orientation internship: from the first day, each student will start a project on his or her area of interest to apply in a real case the IT tools explained in the subjects.
The TFM (30 ECTS credit) is a work directed by a tutor, who must first meet with the student. It starts on the first day of the course and constitutes the pivot around which the Master's Degree revolves.
Final Works of Master's Degree 2024-2025
project Nº 01 - ASSIGNED
degree scroll: Dissection of vulnerabilities of clinical impact in breast cancer radioresistance.
project Nº 02 - ASSIGNED
degree scrollArtificial Intelligence applied to Structures functional ANNs
project Nº 03 - ASSIGNED
degree scrollArtificial Intelligence (AI) to define actionable genetic risk predictors
project NO. 04
degree scrollEndothelial Cell Heterogeneity in Adipose Tissues: Understanding Cell Population Dynamics in Response to Diet Using scRNA Sequencing
project Nº 05 - ASSIGNED
degree scroll: Characterization of the antigenic presentation in lung cancer metastases
project Nº 06 - ASSIGNED
degree scrollThe role of Machine Learning in Radiopharmaceutical Therapy
project Nº07 - ASSIGNED
degree scrollOptimization of a metataxonomy analysis pipeline from ONT long reads
project Nº 08 - ASSIGNED
degree scroll: Metabolomic and microbiota biomarkers in relation to per diem expenses and metabolic disease.
project Nº 09 - ASSIGNED
degree scroll: Massive drug repositioning using Graph Neural Networks
project Nº 10 - ASSIGNED
degree scroll: data analysis topological of particle dynamical systems
project Nº 11 - ASSIGNED
degree scroll: development of sustainable polymeric materials by photocrosslinking
project Nº 12 - ASSIGNED
degree scroll: Study of bacterial and fungal communities belonging to the soil-plant system in response to the use of biostimulants on crops of agronomic interest.
project Nº 13 - ASSIGNED
degree scrollassessment of the soil urease inhibition capacity of various vegetable by-products from the agri-food and paper industry.
project Nº 14 - ASSIGNED
degree scrollDeconvolving the DMG tumor microenvironment from spatially resolved transcriptomics using Deep Learning models
project Nº 15 - ASSIGNED
degree scrollNumerical Simulation of Self-propelled Macroscopic Particles
project Nº 16 - ASSIGNED
degree scrollDevelopment of a tool to simulate drug and response time profiles of biologics exhibiting Target Mediated Drug Disposition
project Nº 17 - ASSIGNED
degree scrollBenchmarking of tools that infer gene expression from genetic data
project Nº 18 - ASSIGNED
degree scrollMachine learning models to elucidate the transcriptional dynamics in mCRPC at single-cell resolution
project Nº 19 - ASSIGNED
degree scrolldevelopment and implementation of an AI for automatic identification of underwater acoustic events. model
Final Works of Master's Degree 2023-2024
project Nº 01
degree scroll: development of new selective adsorbent materials and application in water treatment
project Nº 02
degree scroll: Programming of a robot swarm
project Nº 03 : NEW MOLECULAR TARGETS FOR CCA TREATMENT
degree scrollNew Molecular Targets for CCA Treatment
project NO. 04 ASSIGNED
degree scrollThe role of zoos in the reintroduction of endangered species
project NO. 05
degree scroll: Precission mapping of a lymphedema genetic signature in radiotoxicity in breast cancer patients
project NO. 06 ASSIGNED
degree scrollAutomatic contouring of organs in medical imaging with application in radiotherapy.
project NO. 07 ASSIGNED
degree scrollMicroprotein analysis in search of new antitumor therapies.
project Nº 08
degree scroll: Use of convolutional networks for the study of spatial interactions between immune system cells and tumor cells in pancreatic adenocarcinoma
project NO. 09 ASSIGNED
degree scrollNumerical and experimental modeling of the physisorption process on surfaces.
project NO. 10 ASSIGNED
degree scroll: A new biochemical/bioinformatic tool to detect small circular RNAs
Final Projects Master's Degreefor the academic year 2022-2023
| Title | department o laboratory | Teacher in charge | State |
|---|---|---|---|
|
2. Controlling the collective motion of self-propelled particles using foltovoltaic energy |
Dto. Physics and Applied Mathematics |
Iker Zuriguel Ballaz |
available |
|
Dto. Physics and Applied Mathematics |
Reinaldo García García |
available |
|
|
Dto. Physics and Applied Mathematics |
Ángel Garcimartín Montero |
available |
|
| 18. Computational Mechanistic based Modelling applied to the development of Oncolytic virus. | Pharmaceutical Chemicals and Technology Dept. | José Ignacio Fernández de Trocóniz Fernández | Assigned |
| Title | department o laboratory | Teacher in charge | State |
|---|---|---|---|
| 3. Al-based computational pathology applied to digitised patient biopsies | Anatomy Pathology (CUN) | Carlos E de Andrea | Assigned |
| 7. Search for next-generation biomarkers for early diagnosis and prognostic estimation of patients with cholangiocarcinoma. (The TFM is developed in San Sebastian). |
Liver and Gastrointestinal Diseases | Jesús María Bañales | available |
| 8. Prediction of aptamers with high affinity and specificity in silico | 3.06 | Fernando Pastor | Assigned |
| 10. Use of massive hepatocarcinoma data to develop new therapeutic strategies. | 406 CIMA / UNAV | Puri Fortes | Assigned |
|
Dept. of Computational Biology |
Mikel Hernáez |
Assigned |
|
| 12. Deep learning for automatic annotation of behavioural patterns in non-human primates. | Systems Neuroscience Lab. CIMA. | Miguel Valencia | Assigned |
| 16. Implementation of RNAseq-based approaches to define T cell states and clonality of immunotherapy responses in lymphoma. | Biochemistry and Genetics | Sergio Roa | Assigned |
| Title | department o laboratory | Teacher in charge | State |
|---|---|---|---|
|
Dto. Environmental Biology |
Enrique Baquero |
available |
|
|
5. developmentof new selective adsorbent materials and their application in water treatment. |
Dto. Chemistry |
José Ramón Isasi |
available |
|
6. developmentof new clean methodologies for the manufacture of phosphate fertilisers. |
Dto. Environmental Biology |
José Mª García-Mina Freire |
Assigned |
| 13. Automation of landmark detection in mammalian cranial Structuresfor morphological pattern analysis. | Dto. Environmental Biology | David Galicia Paredes | available |
| 14. Analysis of the sensitivity of different SDM procedures to the degradation of accessible biological and environmental information. | Dto. Environmental Biology | David Galicia Paredes | Assigned |
| 15. Exploring evolutionary relationships in the animal kingdom through molecular traits: controversial phylogenies and cryptic species. | Dto. Environmental Biology | David Galicia Paredes | available |
area of Physics and Applied Mathematics
| Title | department o laboratory | Teacher in charge | State |
|---|---|---|---|
|
6. Experimental image analysis using artificial intelligence techniques. |
Dto. Physics and Applied Mathematics |
Wenceslao González-Viñas |
available |
|
7. assessment of the electrical activity of the left atrium in patients with atrial fibrillation (biomedical imaging). |
Dto. Physics and Applied Mathematics |
Jean. R. Bragard |
available |
|
Dto. Physics and Applied Mathematics |
Ángel Garcimartín Montero |
Assigned |
|
|
Dept. Physics and Applied Mathematics |
Ángel Garcimartín Montero |
available |
|
|
15. evaluation quantitative motility guide of Parkinson's patients |
Dto. Physics and Applied Mathematics |
Javier Burguete Mas |
Assigned |
|
Dto. Physics and Applied Mathematics |
Sergio Ardanaz-Trevijano Moras |
available |
|
|
19. Computational applications of T-subgroup aggregation and indistinguishability. |
Dto. Physics and Applied Mathematics |
Jorge Elorza |
Assigned |
|
Dto. Physics and Applied Mathematics |
Jean Bragard |
available |
area of Bioinformatics
| Title | department o laboratory | Teacher in charge | State |
|---|---|---|---|
|
1. Use of massive hepatocarcinoma data to stratify patients and predict new therapeutic strategies. |
Bioinformatics Unit |
Puri Fortes |
Assigned |
| 3. Exploring evolutionary relationships in the animal kingdom through molecular traits: controversial phylogenies and cryptic species | Dto. Environmental Biology | David Galicia Paredes | Assigned |
|
11. Study of the tumour microenvironment of B lymphomas by scRNAseq analysis. |
Dto. Biochemistry and Genetics |
Sergio Roa |
Assigned |
|
Dto. Biochemistry and Genetics |
Francisco Javier Novo Villaverde |
Assigned |
|
|
Computational Biology Program |
Mikel Hernáez |
Assigned |
|
|
Systems Neuroscience LAB |
Miguel Valencia |
Assigned |
|
| 21. Systems biology approaches for the treatment of mutant KRAS gastrointestinal tumors with dismal prognosis. | Solid Tumour Programme, CIMA - Computational Biology Programme CIMA | Silvestre Vicent | Assigned |
| 22. Studying the transition from Myelodysplastic syndrome to Acute Myeloid from a transcriptomics point of view. | Computational Biology Tecnun | Fernando Carazo | Assigned |
| 23. Deciphering Alternative Splicing and DNA Methylation Association in Head and Neck Squamous Carcinoma. | Computational Biology Tecnun | Fernando Carazo | Assigned |
| 25. A Bioinformatic Methodology to Identify small Circular RNAs. | Gene therapy and regulation of gene expression | Tomás Aragón | Assigned |
area of Biology and Environment
| Title | department o laboratory | Teacher in charge | State |
|---|---|---|---|
|
Dto. Environmental Biology |
David Galicia Paredes |
available |
|
|
5. Automation of landmark detection in mammalian cranial Structures for morphological pattern analysis. |
Dto. Environmental Biology |
David Galicia Paredes |
available |
|
Dto. Environmental Biology |
Rafael Miranda |
Assigned |
|
|
17. Exploitation of the Biodiversity data obtained from sampling in the MSS of the Sierra de Guadarrama. |
Dto. Environmental Biology |
Enrique Baquero |
available |
| Dto. Environmental Biology | Ibon Galparsoro | available |
area of Chemistry
| Title | department o laboratory | Teacher in charge | State |
|---|---|---|---|
|
2. development of new selective adsorbent materials and their application in water treatment. |
Dto. Chemistry |
José Ramón Isasi |
Assigned |
|
Technology Department and Chemistry Pharmaceuticals |
Maria Font |
available |
|
| 24. Microfluidics of hydrogels: process optimisation, characterisation and applications. | Chemistry and Physics and Applied Mathematics | José Ramón Isasi | Assigned |
Julen Torrens
Sergio León
Iván Ruiz
Irene Marin
Many professors in various fields offer FMP titles that they are willing to supervise. Alternatively, the student can search for a lecturer willing to supervise a work of interest to him/her that is not included in this list and propose it as a dissertation. Some examples:
Automated image analysis diagnostic system
The project aims to develop a low-cost diagnostic kit to detect, by means of image analysis on a biological sample , certain diseases that are particularly prevalent in poor countries (tuberculosis, malaria, etc.).
Analysis of the sensitivity of different species distribution models to the degradation of biological and environmental information. available
To know the limitations that the most frequently used methods in the literature have on the quality of the information on entrance, in order to decide which is the most appropriate tool to use depending on the primary data available.
Precision personalised medicine for the treatment of multiple myeloma using Deep Learning techniques
This project proposes to use data of RNA-Seq, DNA-Seq and clinical data to design a new stratification system for multiple myeloma patients based on employment of autoencoders.
Modelling catalytic photodegradation kinetics in aqueous media
The work will consist of developing general kinetic models of photodegradation that take into account other substances present in the aqueous environment.
Director Academic:
Dr. Ángel Garcimartín Montero
board member :
Dr. Mikel Hernáez Arrazola
Secretary:
Dr. David Galicia Paredes